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Using a Convolutional Neural Network as Feature Extractor for Different Machine Learning Classifiers to Diagnose Pneumonia

Yıl 2022, Cilt: 5 Sayı: 1, 48 - 61, 30.04.2022

Enes Ayan

https://doi.org/10.35377/saucis.5.69696.1019187

Öz

Pneumonia is a general public health problem. It is an important risk factor, especially for children under 5 years old and people aged 65 and older. Fortunately, it is a treatable disease when diagnosed in the early phase. The most common diagnostic method known for the disease is chest X-Rays. However, the disease can be confused with different disorders in the lungs or its variants by experts. In this context, computer-aided diagnostic systems are necessary to provide a second opinion to experts. Convolutional neural networks are a subfield in deep learning and they have demonstrated success in solving many medical problems. In this paper, Xception which is a convolutional neural network was trained with the transfer learning method to detect viral pneumonia, normal cases, and bacterial pneumonia in chest X-Rays. Then, five different machine learning classification algorithms were trained with the features obtained by the trained convolutional neural network. The classification performances of the algorithms were compared. According to the test results, Xception achieved the best classification result with an accuracy of 89.74%. On the other hand, SVM achieved the closest classification performance to the convolutional neural network model with 89.58% accuracy.

Anahtar Kelimeler

Artificial Intelligence Pneumonia Convolutional Neural Networks Deep Learning Machine Learning

Kaynakça

  • [1] D. You, G. Jones, and T. Wardlaw, "Levels & Trends in Child Mortality: Report 2011. Estimates Developed by the UN Inter-Agency Group for Child Mortality Estimation.," New York: United Nations Children’s Fund2011.
  • [2] WHO, "Priority diseases and reasons for inclusion," in Chapter 6.22-Pneumonia, 2014.
  • [3] O. Ruuskanen, E. Lahti, L. C. Jennings, and D. R. Murdoch, "Viral pneumonia," The Lancet, vol. 377, no. 9773, pp. 1264-1275, 2011.
  • [4] D. E. Drake, A. Cohen, and J. Cohn, "National hospital antibiotic timing measures for pneumonia and antibiotic overuse," Quality Management in Healthcare, vol. 16, no. 2, pp. 113-122, 2007.
  • [5] WHO, "Standardization of interpretation of chest radiographs for the diagnosis of pneumonia in children," Geneva: World Health Organization2001.
  • [6] M. I. Neuman et al., "Variability in the interpretation of chest radiographs for the diagnosis of pneumonia in children," Journal of Hospital Medicine, vol. 7, no. 4, pp. 294-298, 2012.
  • [7] J. Ker, L. Wang, J. Rao, and T. Lim, "Deep learning applications in medical image analysis," IEEE Access, vol. 6, pp. 9375-9389, 2017.
  • [8] D. Shen, G. Wu, and H.-I. Suk, "Deep learning in medical image analysis," Annual Review of Biomedical Engineering, vol. 19, pp. 221-248, 2017.
  • [9] M. A. Mazurowski, M. Buda, A. Saha, and M. R. Bashir, "Deep learning in radiology: An overview of the concepts and a survey of the state of the art with focus on MRI," Journal of Magnetic Resonance Imaging, vol. 49, no. 4, pp. 939-954, 2019.
  • [10] Y. LeCun, K. Kavukcuoglu, and C. Farabet, "Convolutional networks and applications in vision," in Proceedings of 2010 IEEE international symposium on circuits and systems, 2010, pp. 253-256: IEEE.
  • [11] M. A. Al-Antari, M. A. Al-Masni, and T.-S. Kim, "Deep learning computer-aided diagnosis for breast lesion in digital mammogram," Deep Learning in Medical Image Analysis, pp. 59-72, 2020.
  • [12] H. Li, A. Li, and M. Wang, "A novel end-to-end brain tumor segmentation method using improved fully convolutional networks," Computers in biology medicine, vol. 108, pp. 150-160, 2019. [13] A. Esteva et al., "Dermatologist-level classification of skin cancer with deep neural networks," Nature, vol. 542, no. 7639, p. 115, 2017.
  • [14] P. Rajpurkar et al., "Chexnet: Radiologist-level pneumonia detection on chest x-rays with deep learning," arXiv preprint arXiv:1711.05225, 2017. [15] D. S. Kermany et al., "Identifying medical diagnoses and treatable diseases by image-based deep learning," Cell, vol. 172, no. 5, pp. 1122-1131. e9, 2018.
  • [16] G. Liang and L. Zheng, "A transfer learning method with deep residual network for pediatric pneumonia diagnosis," Computer Methods and Programs in Biomedicine, p. 104964, 2019.
  • [17] V. Chouhan et al., "A Novel Transfer Learning Based Approach for Pneumonia Detection in Chest X-ray Images," Applied Sciences, vol. 10, no. 2, p. 559, 2020.
  • [18] X. Gu, L. Pan, H. Liang, and R. Yang, "Classification of bacterial and viral childhood pneumonia using deep learning in chest radiography," in Proceedings of the 3rd International Conference on Multimedia and Image Processing, 2018, pp. 88-93.
  • [19] A. Mittal et al., "Detecting Pneumonia using Convolutions and Dynamic Capsule Routing for Chest X-ray Images," Sensors, vol. 20, no. 4, p. 1068, 2020.
  • [20] K. A. Prayogo, A. Suryadibrata, and J. C. Young, "Classification of pneumonia from X-ray images using siamese convolutional network," Telkomnika, vol. 18, no. 3, pp. 1302-1309, 2020.
  • [21] T. Rahman et al., "Transfer learning with deep convolutional neural network (CNN) for pneumonia detection using chest X-ray," Applied Sciences, vol. 10, no. 9, p. 3233, 2020.
  • [22] M. F. Hashmi, S. Katiyar, A. G. Keskar, N. D. Bokde, and Z. W. Geem, "Efficient pneumonia detection in chest xray images using deep transfer learning," Diagnostics, vol. 10, no. 6, p. 417, 2020.
  • [23] T. Mahmud, M. A. Rahman, and S. A. Fattah, "CovXNet: A multi-dilation convolutional neural network for automatic COVID-19 and other pneumonia detection from chest X-ray images with transferable multi-receptive feature optimization," Computers in biology medicine, vol. 122, p. 103869, 2020. [24] K. El Asnaoui, "Design ensemble deep learning model for pneumonia disease classification," International Journal of Multimedia Information Retrieval, vol. 10, no. 1, pp. 55-68, 2021.
  • [25] M. B. Darici, Z. Dokur, and T. Olmez, "Pneumonia Detection and Classification Using Deep Learning on Chest X-Ray Images," International Journal of Intelligent Systems Applications in Engineering, vol. 8, no. 4, pp. 177-183, 2020. [26] D. Kermany and M. Goldbaum, "Labeled optical coherence tomography (OCT) and Chest X-Ray images for classification," Mendeley Data, vol. 2, 2018.
  • [27] J. Koushik, "Understanding convolutional neural networks," arXiv preprint arXiv:1605.09081, 2016.
  • [28] F. Chollet, "Xception: Deep learning with depthwise separable convolutions," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2017, pp. 1251-1258. [29] K. Weiss, T. M. Khoshgoftaar, and D. Wang, "A survey of transfer learning," Journal of Big Data, vol. 3, no. 1, p. 9, 2016.
  • [30] J. Deng, W. Dong, R. Socher, L.-J. Li, K. Li, and L. Fei-Fei, "Imagenet: A large-scale hierarchical image database," in 2009 IEEE Conference on Computer Vision and Pattern Recognition, 2009, pp. 248-255: IEEE.
  • [31] W. Rawat and Z. Wang, "Deep convolutional neural networks for image classification: A comprehensive review," Neural Computation, vol. 29, no. 9, pp. 2352-2449, 2017.
  • [32] C. Shorten and T. M. Khoshgoftaar, "A survey on image data augmentation for deep learning," Journal of Big Data, vol. 6, no. 1, p. 60, 2019.
  • [33] E. Ayan and H. M. Ünver, "Data augmentation importance for classification of skin lesions via deep learning," in Electric Electronics, Computer Science, Biomedical Engineerings' Meeting (EBBT), 2018, pp. 1-4: IEEE.
  • [34] G. Bonaccorso, Machine learning algorithms. Packt Publishing Ltd, 2017.

Yıl 2022, Cilt: 5 Sayı: 1, 48 - 61, 30.04.2022

Enes Ayan

https://doi.org/10.35377/saucis.5.69696.1019187

Öz

Kaynakça

  • [1] D. You, G. Jones, and T. Wardlaw, "Levels & Trends in Child Mortality: Report 2011. Estimates Developed by the UN Inter-Agency Group for Child Mortality Estimation.," New York: United Nations Children’s Fund2011.
  • [2] WHO, "Priority diseases and reasons for inclusion," in Chapter 6.22-Pneumonia, 2014.
  • [3] O. Ruuskanen, E. Lahti, L. C. Jennings, and D. R. Murdoch, "Viral pneumonia," The Lancet, vol. 377, no. 9773, pp. 1264-1275, 2011.
  • [4] D. E. Drake, A. Cohen, and J. Cohn, "National hospital antibiotic timing measures for pneumonia and antibiotic overuse," Quality Management in Healthcare, vol. 16, no. 2, pp. 113-122, 2007.
  • [5] WHO, "Standardization of interpretation of chest radiographs for the diagnosis of pneumonia in children," Geneva: World Health Organization2001.
  • [6] M. I. Neuman et al., "Variability in the interpretation of chest radiographs for the diagnosis of pneumonia in children," Journal of Hospital Medicine, vol. 7, no. 4, pp. 294-298, 2012.
  • [7] J. Ker, L. Wang, J. Rao, and T. Lim, "Deep learning applications in medical image analysis," IEEE Access, vol. 6, pp. 9375-9389, 2017.
  • [8] D. Shen, G. Wu, and H.-I. Suk, "Deep learning in medical image analysis," Annual Review of Biomedical Engineering, vol. 19, pp. 221-248, 2017.
  • [9] M. A. Mazurowski, M. Buda, A. Saha, and M. R. Bashir, "Deep learning in radiology: An overview of the concepts and a survey of the state of the art with focus on MRI," Journal of Magnetic Resonance Imaging, vol. 49, no. 4, pp. 939-954, 2019.
  • [10] Y. LeCun, K. Kavukcuoglu, and C. Farabet, "Convolutional networks and applications in vision," in Proceedings of 2010 IEEE international symposium on circuits and systems, 2010, pp. 253-256: IEEE.
  • [11] M. A. Al-Antari, M. A. Al-Masni, and T.-S. Kim, "Deep learning computer-aided diagnosis for breast lesion in digital mammogram," Deep Learning in Medical Image Analysis, pp. 59-72, 2020.
  • [12] H. Li, A. Li, and M. Wang, "A novel end-to-end brain tumor segmentation method using improved fully convolutional networks," Computers in biology medicine, vol. 108, pp. 150-160, 2019. [13] A. Esteva et al., "Dermatologist-level classification of skin cancer with deep neural networks," Nature, vol. 542, no. 7639, p. 115, 2017.
  • [14] P. Rajpurkar et al., "Chexnet: Radiologist-level pneumonia detection on chest x-rays with deep learning," arXiv preprint arXiv:1711.05225, 2017. [15] D. S. Kermany et al., "Identifying medical diagnoses and treatable diseases by image-based deep learning," Cell, vol. 172, no. 5, pp. 1122-1131. e9, 2018.
  • [16] G. Liang and L. Zheng, "A transfer learning method with deep residual network for pediatric pneumonia diagnosis," Computer Methods and Programs in Biomedicine, p. 104964, 2019.
  • [17] V. Chouhan et al., "A Novel Transfer Learning Based Approach for Pneumonia Detection in Chest X-ray Images," Applied Sciences, vol. 10, no. 2, p. 559, 2020.
  • [18] X. Gu, L. Pan, H. Liang, and R. Yang, "Classification of bacterial and viral childhood pneumonia using deep learning in chest radiography," in Proceedings of the 3rd International Conference on Multimedia and Image Processing, 2018, pp. 88-93.
  • [19] A. Mittal et al., "Detecting Pneumonia using Convolutions and Dynamic Capsule Routing for Chest X-ray Images," Sensors, vol. 20, no. 4, p. 1068, 2020.
  • [20] K. A. Prayogo, A. Suryadibrata, and J. C. Young, "Classification of pneumonia from X-ray images using siamese convolutional network," Telkomnika, vol. 18, no. 3, pp. 1302-1309, 2020.
  • [21] T. Rahman et al., "Transfer learning with deep convolutional neural network (CNN) for pneumonia detection using chest X-ray," Applied Sciences, vol. 10, no. 9, p. 3233, 2020.
  • [22] M. F. Hashmi, S. Katiyar, A. G. Keskar, N. D. Bokde, and Z. W. Geem, "Efficient pneumonia detection in chest xray images using deep transfer learning," Diagnostics, vol. 10, no. 6, p. 417, 2020.
  • [23] T. Mahmud, M. A. Rahman, and S. A. Fattah, "CovXNet: A multi-dilation convolutional neural network for automatic COVID-19 and other pneumonia detection from chest X-ray images with transferable multi-receptive feature optimization," Computers in biology medicine, vol. 122, p. 103869, 2020. [24] K. El Asnaoui, "Design ensemble deep learning model for pneumonia disease classification," International Journal of Multimedia Information Retrieval, vol. 10, no. 1, pp. 55-68, 2021.
  • [25] M. B. Darici, Z. Dokur, and T. Olmez, "Pneumonia Detection and Classification Using Deep Learning on Chest X-Ray Images," International Journal of Intelligent Systems Applications in Engineering, vol. 8, no. 4, pp. 177-183, 2020. [26] D. Kermany and M. Goldbaum, "Labeled optical coherence tomography (OCT) and Chest X-Ray images for classification," Mendeley Data, vol. 2, 2018.
  • [27] J. Koushik, "Understanding convolutional neural networks," arXiv preprint arXiv:1605.09081, 2016.
  • [28] F. Chollet, "Xception: Deep learning with depthwise separable convolutions," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2017, pp. 1251-1258. [29] K. Weiss, T. M. Khoshgoftaar, and D. Wang, "A survey of transfer learning," Journal of Big Data, vol. 3, no. 1, p. 9, 2016.
  • [30] J. Deng, W. Dong, R. Socher, L.-J. Li, K. Li, and L. Fei-Fei, "Imagenet: A large-scale hierarchical image database," in 2009 IEEE Conference on Computer Vision and Pattern Recognition, 2009, pp. 248-255: IEEE.
  • [31] W. Rawat and Z. Wang, "Deep convolutional neural networks for image classification: A comprehensive review," Neural Computation, vol. 29, no. 9, pp. 2352-2449, 2017.
  • [32] C. Shorten and T. M. Khoshgoftaar, "A survey on image data augmentation for deep learning," Journal of Big Data, vol. 6, no. 1, p. 60, 2019.
  • [33] E. Ayan and H. M. Ünver, "Data augmentation importance for classification of skin lesions via deep learning," in Electric Electronics, Computer Science, Biomedical Engineerings' Meeting (EBBT), 2018, pp. 1-4: IEEE.
  • [34] G. Bonaccorso, Machine learning algorithms. Packt Publishing Ltd, 2017.
Toplam 29 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Yapay Zeka, Bilgisayar Yazılımı, Yazılım Mühendisliği (Diğer)
Bölüm Makaleler
Yazarlar

Enes Ayan 0000-0002-5463-8064

Yayımlanma Tarihi 30 Nisan 2022
Gönderilme Tarihi 4 Kasım 2021
Kabul Tarihi 1 Mart 2022
Yayımlandığı Sayı Yıl 2022Cilt: 5 Sayı: 1

Kaynak Göster

IEEE E. Ayan, “Using a Convolutional Neural Network as Feature Extractor for Different Machine Learning Classifiers to Diagnose Pneumonia”, SAUCIS, c. 5, sy. 1, ss. 48–61, 2022, doi: 10.35377/saucis.5.69696.1019187.
 Kapak Resmi İndir

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